Changelog

All notable changes to PyPopART will be documented in this file.

The format is based on Keep a Changelog, and this project adheres to Semantic Versioning.

Unreleased

Added

• Comprehensive documentation site with MkDocs
• Interactive web-based GUI with Dash and Cytoscape
• TSW (Tight Span Walker) algorithm implementation
• Layout algorithms for network visualization
• Population genetics statistics (Tajima's D, Fu's Fs, FST)
• Network topology analysis tools
• Multiple export formats for networks

Changed

• Improved CLI interface with better error handling
• Enhanced visualization options

0.1.0 - Initial Release

Added

• Core haplotype network algorithms (MST, MSN, TCS, MJN, PN)
• Distance calculation with multiple evolutionary models
• FASTA, NEXUS, PHYLIP, and GenBank file format support
• Static and interactive visualization
• Command-line interface
• Python API for programmatic access
• Network statistics and analysis tools